Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs9708736 | chr16:20719627 | A/G | 1.37E-5 | 485 | 16.37 | 14.67 | 17.65 | KM Plot |
| THCA | rs9710520 | chr19:58168922 | A/G | 0.000134 | 477 | 14.93 | 17.83 | 4.87 | KM Plot |
| THCA | rs9724763 | chr1:91750923 | T/C | 8.94E-6 | 483 | 15.48 | 17.08 | 17.77 | KM Plot |
| THCA | rs9743621 | chr14:23227204 | C/T | 1.01E-9 | 484 | 15.32 | 16.85 | 19.02 | KM Plot |
| THCA | rs9747983 | chr17:37626616 | T/C | 0.000278 | 485 | 15.83 | 15.97 | 15.63 | KM Plot |
| THCA | rs9749411 | chr19:58225584 | G/T | 3.9E-5 | 477 | 15.03 | 17.23 | 15.13 | KM Plot |
| THCA | rs976416 | chr2:48215428 | T/C | 6.55E-5 | 477 | 14.87 | 16.07 | 15.95 | KM Plot |
| THCA | rs9774945 | chr9:94710847 | C/A | 1.09E-5 | 479 | 16.63 | 16.48 | 13.32 | KM Plot |
| THCA | rs978145 | chr5:113066085 | G/C | 0 | 484 | 15.27 | 19.13 | 14.8 | KM Plot |
| THCA | rs9806062 | chr14:90849408 | G/T | 6.49E-9 | 485 | 14.8 | 15.32 | 16.13 | KM Plot |
| THCA | rs9811745 | chr3:127678869 | A/C | 0 | 488 | 16.37 | 14.93 | 6.03 | KM Plot |
| THCA | rs9826051 | chr3:157548391 | A/G | 3.92E-5 | 490 | 21 | 17.07 | 15.2 | KM Plot |
| THCA | rs9826284 | chr3:100651088 | A/C | 2.5E-9 | 489 | 15.87 | 16.63 | 9.22 | KM Plot |
| THCA | rs9827694 | chr3:100648298 | G/A | 2.5E-9 | 489 | 15.87 | 16.63 | 9.22 | KM Plot |
| THCA | rs9830149 | chr3:127669950 | G/A | 0 | 490 | 16.37 | 14.82 | 6.03 | KM Plot |